The paper presenting activities of the Computational Modeling of Biological Systems (SysMod) Community of Special Interest (COSI) of the International Society for Computational Biology is now in press in Bioinformatics.
The 6th annual SysMod meeting at ISMB/ECCB will take place as a virtual event, and is scheduled on July 29th and 30th. The program is now available. I am honoured to chair the first session on Disease and multi-scale modelling.
May 2021
Our paper "In silico logical modelling to uncover cooperative interactions in
cancer", with F. Janody and G. Selvaggio is now online.
April 2021
Our paper "In silico logical modelling to uncover cooperative interactions in
cancer", with F. Janody and G. Selvaggio has been accepted for publication in International Journal of Molecular Sciences (IJMS).
October 2020
Our paper "Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae" is now published!
September 2020
Our paper "Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae" has been accepted for publication in Scientific Reports.
August 2020
The SBML L3 paper "SBML Level 3: an extensible format for the exchange and reuse of biological models" is now published!
July 2020
The SBML L3 paper "SBML Level 3: an extensible format for the exchange and reuse of biological models" has been accepted for publication in Molecular Systems Biology.
The Manuscript Touré et al. on MI2CAST (DOI) is now published in Bioinformatics!
The manuscript has been accepted for publication in Bioinformatics:
Touré, V.; Vercruysse, S.; Acencio, M.L.; Lovering, R.; Orchard, S.; Bradley, G.; Casals-Casas, C.; Chaouiya, C.; del-Toro, N.; Flobak, A.; Gaudet, P.; Hermjakob, H.; Licata, L.; Laegreid, A.; Mungall, C.; Niknejad, A.; Panni, S.; Perfetto, L.; Porras, P.; Pratt, D.; Thieffry, D.; Thomas, P.; Turei, D.; Saez-Rodriguez, J.; Kuiper, M. The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST). Preprints 2020, 2020040480 (DOI)
Latest publications
Vasundra Touré, Steven Vercruysse, Marcio Luis Acencio, Ruth C Lovering, Sandra Orchard, Glyn Bradley, Cristina Casals-Casas, Claudine Chaouiya, Noemi del-Toro, Asmund Flobak, Pascale Gaudet, Henning Hermjakob, Charles Tapley Hoyt, Luana Licata, Astrid Lægreid, Christopher J Mungall, Anne Niknejad, Simona Panni, Livia Perfetto, Pablo Porras, Dexter Pratt, Julio Saez-Rodriguez, Denis Thieffry, Paul D Thomas, Dénes Turei, Martin Kuiper, The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST), Bioinformatics, btaa622
(DOI)
Selvaggio Gianluca, Canato Sara, Pawar Archana, Monteiro Pedro T., Guerreiro Patrícia S., Brás M. Manuela, Janody Florence and Chaouiya Claudine. Hybrid epithelial-mesenchymal phenotypes are controlled by microenvironmental factors. Cancer Research, Volume 80, Issue 11, pp. 2407-20 (DOI)
Niarakis Anna , Kuiper Martin, Ostaszewski Marek ,
Sheriff Rahuman S. Malik, Casals-Casas Cristina, Thieffry Denis,
Freeman Tom C., Thomas Paul, Vasundra Touré,
Noel Vincent, Stoll Gautier, Saez-Rodriguez Julio, Naldi Aurélien, Oshurko Eugenia, Xenarios Ioannis, Soliman Sylvain , Chaouiya Claudine, Helikar Tomás and
Calzone Laurence. Setting the basis of best practices and standards for curation and annotation of logical models
in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop
Briefings in Bioinformatics , bbaa046, 2020 (DOI)
